Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data

Mikael Trellet , Nicolas Férey , Jakub Flotyński , Marc Baaden

Abstract

The advances made in recent years in the field of structural biology significantly increased the throughput and complexity of data that scientists have to deal with. Combining and analyzing such heterogeneous amounts of data became a crucial time consumer in the daily tasks of scientists. However, only few efforts have been made to offer scientists an alternative to the standard compartmentalized tools they use to explore their data and that involve a regular back and forth between them. We propose here an integrated pipeline especially designed for immersive environments, promoting direct interactions on semantically linked 2D and 3D heterogeneous data, displayed in a common working space. The creation of a semantic definition describing the content and the context of a molecular scene leads to the creation of an intelligent system where data are (1) combined through pre-existing or inferred links present in our hierarchical definition of the concepts, (2) enriched with suitable and adaptive analyses proposed to the user with respect to the current task and (3) interactively presented in a unique working environment to be explored.
Author Mikael Trellet - Bijvoet Center for Biomolecular Research, Netherlands
Mikael Trellet,,
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, Nicolas Férey - VENISE Group, LIMSI, CNRS, Université Paris Sud, Orsay, France
Nicolas Férey,,
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, Jakub Flotyński (WIiGE / KTI)
Jakub Flotyński,,
- Department of Information Technology
, Marc Baaden - Institut de Biologie Physico-Chimique, Univ Paris Diderot, Sorbonne Paris Cité, PSL Research University, Paris, France
Marc Baaden,,
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Journal seriesJournal of integrative bioinformatics, ISSN 1613-4516, (0 pkt, indicated Indexes)
Issue year2018
Vol15
No2
Pages1-19
Publication size in sheets0.9
Keywords in EnglishVirtual Reality, Semantics for Interaction, Structural Biology
ASJC Classification2700 General Medicine
DOIDOI:10.1515/jib-2018-0004
URL https://doi.org/10.1515/jib-2018-0004
Languageen angielski
Score (nominal)15
Score sourcejournalIndex
ScoreMinisterial score = 15.0, 09-04-2020, ArticleFromJournal
Citation count*12 (2020-06-15)
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